Publications and presentations

Multiple timescale dynamics of conductance-based models of brainstem locomotor neurons

A. K. Thomas & J. E. Rubin

arXiv:2603.11467, under review at SIAM Life Sciences

arXiv Summary

XPPLORE: Import, visualize, and analyze XPPAUT data in MATLAB

M. Martin*, A. K. Thomas* & G. B. Ermentrout  *equal contribution

International Journal of Bifurcation and Chaos, 35(13), 2550165

DOI Code Summary

Mechanistic modeling and dynamics analysis of brainstem locomotor neurons to study motor recovery in Parkinson’s disease

A. K. Thomas, J. E. Rubin

American Conference on Pharmacometrics (ACoP), National Harbor, MD

ISoP Mathematics and Computational Sciences (MCS) SIG Award

Modeling and analyzing pedunculopontine neurons and the impact of their projections on respiratory patterning

A. K. Thomas, J. E. Rubin

SIAM Conference on the Life Sciences, Minisymposium MS31, Cleveland, OH

Calcium currents shape PPN response to stimulation: A computational perspective

A. K. Thomas, J. E. Rubin, M. Fallah, R. C. Evans, A. H. Gittis

Society for Neuroscience, San Diego, CA

Cellular and parkinsonian network dynamics in a conductance-based model of the pedunculopontine nucleus in rodents

A. K. Thomas, J. E. Rubin, M. Fallah, R. C. Evans, A. H. Gittis

SIAM Conference on Applications of Dynamical Systems, Denver, CO

Best Poster (Red Sock) Award

Ionic currents and the dynamics of the pedunculopontine nucleus

A. K. Thomas, J. E. Rubin, M. Fallah, R. C. Evans, A. H. Gittis

CNBC Brain Bag, Pittsburgh, PA

Computational model of basal ganglia projections to brainstem for long-term motor recovery in parkinsonian rodents

A. K. Thomas, M. Fallah, R. C. Evans, A. H. Gittis, J. E. Rubin

International Conference on Mathematical Neuroscience (ICMNS), Dublin, Ireland

Computational model of basal ganglia projections to brainstem in long-term motor recovery in Parkinson’s disease

A. K. Thomas, M. Fallah, R. C. Evans, A. H. Gittis, J. E. Rubin

Association for Women in Mathematics (AWM) Student Seminar Series, University of Pittsburgh

Integration of proprioceptive feedback for forward locomotion in Caenorhabditis elegans network model

A. K. Thomas, M. Clark, C. Seggern, T. Hong, X. Zhao

Joint Mathematics Meetings (JMM)

Outstanding Poster Award